U.S. flag

An official website of the United States government, Department of Justice.

Total RNA Analysis of Bacterial Community Structural and Functional Shifts Throughout Vertebrate Decomposition

NCJ Number
Journal of Forensic Sciences Volume: 64 Issue: 6 Dated: 2019 Pages: 1707-1719
Date Published
13 pages

Since multiple methods have been proposed to provide accurate time since death estimations, and recently, the discovery of bacterial community turnover during decomposition has shown itself to have predictable patterns that may prove useful, the current study demonstrated the use of metatranscriptomics from the postmortem microbiome to simultaneously obtain community structure and functional data across postmortem intervals (PMIs).


The study found that bacterial succession patterns reveal similar trends as detected through DNA analysis, such as increasing Clostridiaceae as decomposition occurs, strengthening the reliability of total RNA community analyses. This study also provided one of the first analyses of RNA transcripts to characterize bacterial metabolic pathways during decomposition. Distinct pathways were identified, such as amino acid metabolism, to be strongly up-regulated with increasing PMIs. Elucidating the metabolic activity of postmortem microbial communities provides the first steps to discovering postmortem functional biomarkers, since functional redundancy across bacteria may reduce host individual microbiome variability. (publisher abstract modified)

Date Published: January 1, 2019