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Genome-wide Association Study of Pigmentary Traits (Skin and Iris Color) in Individuals of East Asian Ancestry

NCJ Number
253490
Date Published
2017
Length
11 pages
Author(s)
Lida Rawofi; Melissa Edwards; S. Krithika; Phuong Le; David Cha; Zhaohui Yang; Yanyun Ma; Jiucun Wang; Bing Su; Li Jin; Heather I. Norton; Esteban J. Parra
Agencies
NIJ-Sponsored
Publication Type
Research (Applied/Empirical), Report (Study/Research), Report (Grant Sponsored), Program/Project Description
Grant Number(s)
2013-DN-BX-K011
Annotation
Since there is currently limited knowledge about the genetics underlying pigmentary traits in East Asian populations, this article reports the results of the first genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.
Abstract
Researchers obtained quantitative skin pigmentation measures (M-index) in the inner upper arm of the participants, using a portable reflectometer (N = 305). Quantitative measures of iris color (expressed as L*, a* and b* CIELab coordinates) were extracted from high-resolution iris pictures (N = 342). The study also measured the color differences between the pupillary and ciliary regions of the iris (e.g., iris heterochromia). DNA samples were genotyped with Illuminas Infinium Multi-Ethnic Global Array (MEGA) and imputed using the 1000 Genomes Phase 3 samples as reference haplotypes. For skin pigmentation, we did not observe any genome-wide significant signal. Researchers followed-up in three independent Chinese samples the lead SNPs of five regions showing multiple common markers (minor allele frequency 5 percent) with good imputation scores and suggestive evidence of association (p-values < 10 5). One of these markers, rs2373391, which is in an intron of the ZNF804B gene on chromosome 7, was replicated in one of the Chinese samples (p = 0.003). For iris color, researchers observed genome-wide signals in the OCA2 region on chromosome 15. This signal is driven by the non-synonymous rs1800414 variant, which explains 11.9 percent, 10.4 percent, and 6 percent of the variation observed in the b*, a* and L* coordinates in the sample, respectively; however, the OCA2 region was not associated with iris heterochromia. The researchers advise that additional genome-wide association studies in East Asian samples will be necessary to further disentangle the genetic architecture of pigmentary traits in East Asian populations. (publisher abstract modified)
Date Created: July 20, 2021