The application of the skin virome for human identification

• NCJ Number: 304285
• Journal: Forensic Science International-Genetics Volume: 57 Dated: March 2022
• Author(s): Ema H. Graham; Jennifer L. Clarke; Samodha C. Fernando; Joshua R. Herr; Michael S. Adamowicz
• Date Published: March 2022
• Grant Number(s): 2017-IJ-CX-0025; 2019-75-CX-0017; 2019-R2-CX-0048
• Agencies: NIJ-Sponsored
• Publication Type: Research (Applied/Empirical)
• Award: The Human Virome as Trace Evidence in Forensic Investigation; Application of the Human Virome to Touched Objects and Hair Shafts; Development of a Human Virome Based Microarray as a Forensic Tool

Annotation

This study assessed the stability, diversity, and individualization of the human skin virome, with an additional goal of identifying putative viral signatures that can be used in conjunction with traditional forensic STR loci.

Abstract

The use of skin virome offers a unique approach for human identification purposes in instances where a viable and statistically relevant human DNA profile is unavailable. The skin virome may act as an alternative DNA profile and/or an additional form of probative genetic material. To date, no study has attempted to investigate the human virome over a time series across various physical locations of the body to identify its diagnostic potential as a tool for human identification. To  accomplish this, human viral metagenomes were collected and sequenced from 42 individuals at three anatomical locations (left hand, right hand, and scalp) across multiple collection periods over a 6-month window of time. Assembly dependent and independent bioinformatic approaches, along with a database-centered assessment of viral identification, resulted in three sets of stable putative viral markers. In total, with the three sets combined, the study identified 59 viral biomarker regions, consisting of viral species and uncharacterized viral genome assemblies, which were stable over the sampling period. Additionally, the study found the abundance profiles of these 59 viral biomarkers, based on presence or absence, to be significantly different across subjects (P < 0.001). This study demonstrates that not only is the human virome applicable for use in human identification, but has many viral signatures that can putatively be used for forensic applications, thus providing a foundation for the novel field of forensic virology. (publisher abstract modified)