Since only a few studies have investigated the association of single nucleotide polymorphisms in STAT3 gene with the susceptibility to cancer and response to chemotherapy, the goal of the current project was to determine the allele frequencies of rs3869550, rs957971, and rs7211777 at the STAT3 gene in North-African populations and compare them to 1000 genomes populations, and to investigate their relation with cancer.
The targeted SNPs have been analyzed in six Tunisian populations and a sample of Libyans using TaqMan® Assay. The results were compared to 1000 Genomes Project population samples. Targeting of the regions encompassing the three SNPs by micro-ARN was assessed using miR databases. The analysis of the 3 SNPs showed that North African populations were close to South Asians. As expected, African populations presented a significant frequency of the ancestral CCG haplotype in contrast to other populations where the fully derived TGA haplotype was more frequent. The presence and diversity of rare haplotypes at STAT3 in North African populations could have been generated by recombination between the two major haplotypes. A screening of the micro-RNA databases showed that the STAT3 region with the mutated allele of rs7211777 (G>A) could be targeted by miR hsa-miR-3606-5p, which also targets genes involved in breast cancer. 6 figures, 4 tables, and 44 references (publisher abstract modified)
- Validation of a top-down DNA profile analysis for database searching using a fully continuous probabilistic genotyping model
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